CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Added

• Phase 5: Polish, Observability, and Documentation

  • Structured logging via stroke_deepisles_demo.core.logging.
  • Enhanced configuration via pydantic-settings.
  • Comprehensive documentation (README, CONTRIBUTING, guides).
  • GitHub Actions CI pipeline.

• Phase 4: Gradio UI and Visualization

  • Interactive Gradio application (ui/app.py).
  • NiiVue integration for 3D/multi-planar visualization.
  • Matplotlib slice comparison plots.

• Phase 3: End-to-End Pipeline

  • PipelineResult and run_pipeline_on_case.
  • Metrics calculation (Dice score, Volume).
  • CLI (stroke-demo) with list and run commands.

• Phase 2: DeepISLES Docker Integration

  • Wrapper for DeepISLES Docker container.
  • Automatic GPU detection and fallback.
  • Input/Output validation and staging.

• Phase 1: Data Access Layer

  • Integration with HuggingFace Datasets (ISLES24-MR-Lite).
  • Local NIfTI file adapter.
  • Lazy loading of large neuroimaging files.

• Phase 0: Repository Bootstrap

  • Project structure with uv and hatchling.
  • Strict typing with mypy.
  • Linting/Formatting with ruff.
  • Testing with pytest.